Welcome to the BovineMine Tutorial!

BovineMine is a data mining warehouse for Bos taurus genome (UMD3.1.1 assembly), powered by InterMine.

Link to main site: http://bovinegenome.org/bovinemine

Link to our YouTube Channel: Bovine Genome Database on YouTube

Presentations:

• Generating Customized Integrated Functional Annotation Datasets with BovineMine - ISAG 2017

BovineMine integrates datasets from various data sources such as NCBI RefSeq, ENSEMBL, UniProt, GO annotations, EnsemblCompara, Homologene, Reactome. Additionally, BovineMine also integrates datasets from http://www.bovinegenome.org.

Link to the available datasets in BovineMine: http://bovinegenome.org/bovinemine/dataCategories.do

The Bovine Genome Database is supported by the European Union’s Seventh Framework Programme for research, technological development and demonstration under grant agreement no. 613689, and has been supported by grants 2007-35616-17882 and 2010-65205-20407 from the USDA National Institute of Food and Agriculture. BGD is hosted at the University of Missouri. If you have comments or if you wish to report a problem, please contact the Bovine Genome Database Administrator.

Contents:

• Tutorial
  • Overview
  • Navigation and Searching in BovineMine
  • Report Page
  • BLAST
  • Genomic Region Search
  • Lists
  • MyMine
  • API
  • Data Sources

For more generic examples on how to use InterMine, click here. These are tutorials created by FlyMine that showcase the different features of InterMine.

Indices and tables

• Index
• Module Index
• Search Page